HL_11DG_048
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 11DG|1|a|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11DG_048 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.171
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
11DG|1|a|U|566
11DG|1|a|U|567
11DG|1|a|U|568
11DG|1|a|U|569
11DG|1|a|G|570
11DG|1|a|U|571
11DG|1|a|A|572
11DG|1|a|U|573
11DG|1|a|A|574
11DG|1|a|A|575
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain k
- Large ribosomal subunit protein uL15
- Chain p
- 50S ribosomal protein L20
- Chain q
- Large ribosomal subunit protein bL21
- Chain z
- 50S ribosomal protein L32
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