HL_11DG_055

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

11DG|1|a|U|827, 11DG|1|a|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_055 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.1838

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

11DG|1|a|U|826
11DG|1|a|U|827
11DG|1|a|U|828
11DG|1|a|A|829
11DG|1|a|G|830
11DG|1|a|G|831

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15