HL_11DG_066

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

11DG|1|a|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_066 not in the Motif Atlas

Geometric match to HL_8B0X_066

Geometric discrepancy: 0.1857

The information below is about HL_8B0X_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

11DG|1|a|C|1533
11DG|1|a|U|1534
11DG|1|a|A|1535
11DG|1|a|C|1536
11DG|1|a|G|1537
11DG|1|a|G|1538

Current chains

Chain a

23S ribosomal RNA

Nearby chains