HL_11DG_073

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

11DG|1|a|A|1780, 11DG|1|a|U|1781, 11DG|1|a|U|1782, 11DG|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_073 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.1235

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

11DG|1|a|U|1777
11DG|1|a|U|1778
11DG|1|a|U|1779
11DG|1|a|A|1780
11DG|1|a|U|1781
11DG|1|a|U|1782
11DG|1|a|A|1783
11DG|1|a|A|1784
11DG|1|a|A|1785
11DG|1|a|A|1786
11DG|1|a|A|1787

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

50S ribosomal protein L2