HL_11DG_075

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

11DG|1|a|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_075 not in the Motif Atlas

Homologous match to HL_7A0S_047

Geometric discrepancy: 0.599

The information below is about HL_7A0S_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

11DG|1|a|C|1868
11DG|1|a|G|1869
11DG|1|a|C|1870
11DG|1|a|A|1871
11DG|1|a|A|1872
11DG|1|a|G|1873

Current chains

Chain a

23S ribosomal RNA

Nearby chains