HL_11DG_078

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

11DG|1|a|6MZ|2030, 11DG|1|a|A|2031, 11DG|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_078 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2579

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

11DG|1|a|G|2027
11DG|1|a|U|2028
11DG|1|a|G|2029
11DG|1|a|6MZ|2030
11DG|1|a|A|2031
11DG|1|a|G|2032
11DG|1|a|A|2033
11DG|1|a|U|2034
11DG|1|a|G|2035
11DG|1|a|C|2036

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain z

50S ribosomal protein L32