HL_11DG_082

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_082 not in the Motif Atlas

Geometric match to HL_9DFE_198

Geometric discrepancy: 0.3548

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11DG|1|a|G|2304
11DG|1|a|U|2305
11DG|1|a|C|2306
11DG|1|a|G|2307
11DG|1|a|G|2308
11DG|1|a|A|2309
11DG|1|a|C|2310
11DG|1|a|A|2311
11DG|1|a|U|2312

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5