HL_11DG_094

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

11DG|1|a|U|2797, 11DG|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_094 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.2403

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_58375.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

11DG|1|a|C|2795
11DG|1|a|U|2796
11DG|1|a|U|2797
11DG|1|a|U|2798
11DG|1|a|A|2799
11DG|1|a|A|2800
11DG|1|a|G|2801

Current chains

Chain a

23S ribosomal RNA

Nearby chains