HL_11EL_081

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11EL_081 not in the Motif Atlas

Geometric match to HL_8B0X_101

Geometric discrepancy: 0.1073

The information below is about HL_8B0X_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11EL|1|a|G|2304
11EL|1|a|U|2305
11EL|1|a|C|2306
11EL|1|a|G|2307
11EL|1|a|G|2308
11EL|1|a|A|2309
11EL|1|a|C|2310
11EL|1|a|A|2311
11EL|1|a|U|2312

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5