HL_11FV_008

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2604

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

11FV|1|C|A|314
11FV|1|C|A|315
11FV|1|C|C|316
11FV|1|C|U|317
11FV|1|C|G|318
11FV|1|C|A|319
11FV|1|C|G|320
11FV|1|C|A|321
11FV|1|C|C|322
11FV|1|C|A|323
11FV|1|C|C|324
11FV|1|C|G|325
11FV|1|C|G|326
11FV|1|C|U|327

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS20

Chain x

Small ribosomal subunit protein bS16