HL_11FV_021

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

11FV|1|C|G|965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_021 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.2392

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11FV|1|C|G|957
11FV|1|C|A|958
11FV|1|C|A|959
11FV|1|C|G|960
11FV|1|C|C|961
11FV|1|C|A|962
11FV|1|C|A|963
11FV|1|C|C|964
11FV|1|C|G|965
11FV|1|C|C|966

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein uS9

Chain q

Small ribosomal subunit protein uS10

Chain u

Small ribosomal subunit protein uS13