HL_11FV_030

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUCAGAAUGU

Length

11 nucleotides

Bulged bases

11FV|1|C|U|1358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_030 not in the Motif Atlas

Homologous match to HL_6CZR_101

Geometric discrepancy: 0.1905

The information below is about HL_6CZR_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11FV|1|C|A|1350
11FV|1|C|A|1351
11FV|1|C|U|1352
11FV|1|C|C|1353
11FV|1|C|A|1354
11FV|1|C|G|1355
11FV|1|C|A|1356
11FV|1|C|A|1357
11FV|1|C|U|1358
11FV|1|C|G|1359
11FV|1|C|U|1360

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein uS9

Chain q

Small ribosomal subunit protein uS10

Chain v

Small ribosomal subunit protein uS14