HL_11FV_044

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

11FV|1|I|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_044 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3204

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

11FV|1|I|A|382
11FV|1|I|C|383
11FV|1|I|A|384
11FV|1|I|C|385
11FV|1|I|G|386
11FV|1|I|U|387
11FV|1|I|G|388
11FV|1|I|G|389
11FV|1|I|U|390
11FV|1|I|A|391
11FV|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L28