HL_11FV_053

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_053 not in the Motif Atlas

Geometric match to HL_8B0X_052

Geometric discrepancy: 0.0946

The information below is about HL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11FV|1|I|G|712
11FV|1|I|G|713
11FV|1|I|U|714
11FV|1|I|A|715
11FV|1|I|A|716
11FV|1|I|C|717
11FV|1|I|A|718
11FV|1|I|C|719

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain w

Small ribosomal subunit protein uS15