HL_11FV_056

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

11FV|1|I|U|827, 11FV|1|I|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_056 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.1689

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

11FV|1|I|U|826
11FV|1|I|U|827
11FV|1|I|U|828
11FV|1|I|A|829
11FV|1|I|G|830
11FV|1|I|G|831

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15