HL_11FV_086

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

11FV|1|I|G|2307, 11FV|1|I|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11FV_086 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.3129

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11FV|1|I|G|2304
11FV|1|I|U|2305
11FV|1|I|C|2306
11FV|1|I|G|2307
11FV|1|I|G|2308
11FV|1|I|A|2309
11FV|1|I|C|2310
11FV|1|I|A|2311
11FV|1|I|U|2312

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL5