HL_11HE_006

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

11HE|1|28|U|224, 11HE|1|28|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_006 not in the Motif Atlas

Geometric match to HL_8GLP_006

Geometric discrepancy: 0.0497

The information below is about HL_8GLP_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

11HE|1|28|C|222
11HE|1|28|G|223
11HE|1|28|U|224
11HE|1|28|G|225
11HE|1|28|G|226

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4