HL_11HE_007

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

11HE|1|28|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_007 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.2193

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

11HE|1|28|G|230
11HE|1|28|U|231
11HE|1|28|G|232
11HE|1|28|U|233
11HE|1|28|G|234
11HE|1|28|A|235
11HE|1|28|G|236
11HE|1|28|G|237
11HE|1|28|C|238

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4