HL_11HE_014

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_014 not in the Motif Atlas

Homologous match to HL_8GLP_018

Geometric discrepancy: 0.0621

The information below is about HL_8GLP_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11HE|1|28|U|1389
11HE|1|28|G|1390
11HE|1|28|A|1391
11HE|1|28|A|1392
11HE|1|28|G|1393
11HE|1|28|G|1394

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein eL13

Chain 36

60S ribosomal protein L36

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a