HL_11HE_016

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_016 not in the Motif Atlas

Homologous match to HL_8GLP_022

Geometric discrepancy: 0.1

The information below is about HL_8GLP_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11HE|1|28|G|1561
11HE|1|28|G|1562
11HE|1|28|A|1563
11HE|1|28|A|1564
11HE|1|28|A|1565
11HE|1|28|C|1566

Current chains

Chain 28

28S rRNA

Nearby chains

Chain ff

60S ribosomal protein L37a