HL_11HE_036

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

11HE|1|28|U|2707, 11HE|1|28|U|2708, 11HE|1|28|C|2709

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_036 not in the Motif Atlas

Geometric match to HL_8Y03_001

Geometric discrepancy: 0.1969

The information below is about HL_8Y03_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

11HE|1|28|G|2705
11HE|1|28|G|2706
11HE|1|28|U|2707
11HE|1|28|U|2708
11HE|1|28|C|2709
11HE|1|28|C|2710

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain EB

Proliferation-associated protein 2G4

Chain cc

Large ribosomal subunit protein uL23