HL_11HE_044

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_044 not in the Motif Atlas

Homologous match to HL_9PN5_046

Geometric discrepancy: 0.0899

The information below is about HL_9PN5_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11HE|1|28|A|3724
11HE|1|28|G|3725
11HE|1|28|A|3726
11HE|1|28|A|3727
11HE|1|28|A|3728
11HE|1|28|U|3729

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 36

60S ribosomal protein L36

Chain 42

eL42

Chain u

60S ribosomal protein L10a