HL_11HE_045

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

11HE|1|28|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_045 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0803

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11HE|1|28|U|3796
11HE|1|28|C|3797
11HE|1|28|U|3798
11HE|1|28|A|3799
11HE|1|28|A|3800
11HE|1|28|U|3801
11HE|1|28|U|3802
11HE|1|28|A|3803
11HE|1|28|G|3804

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 23

60S ribosomal protein L23