HL_11HE_046

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

11HE|1|28|A|3876, 11HE|1|28|A|3877, 11HE|1|28|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_046 not in the Motif Atlas

Homologous match to HL_8GLP_055

Geometric discrepancy: 0.076

The information below is about HL_8GLP_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

11HE|1|28|G|3873
11HE|1|28|G|3874
11HE|1|28|G|3875
11HE|1|28|A|3876
11HE|1|28|A|3877
11HE|1|28|C|3878
11HE|1|28|G|3879
11HE|1|28|G|3880
11HE|1|28|G|3881
11HE|1|28|C|3882

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L3

60S ribosomal protein L3