HL_11HE_051

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_051 not in the Motif Atlas

Homologous match to HL_9PN5_056

Geometric discrepancy: 0.236

The information below is about HL_9PN5_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11HE|1|28|U|4301
11HE|1|28|U|4302
11HE|1|28|C|4303
11HE|1|28|A|4304
11HE|1|28|G|4305
11HE|1|28|U|4306
11HE|1|28|A|4307
11HE|1|28|C|4308
11HE|1|28|G|4309

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 42

eL42

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a