HL_11HE_058

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HE_058 not in the Motif Atlas

Homologous match to HL_8GLP_070

Geometric discrepancy: 0.1328

The information below is about HL_8GLP_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

11HE|1|28|C|4603
11HE|1|28|G|4604
11HE|1|28|A|4605
11HE|1|28|G|4606
11HE|1|28|A|4607
11HE|1|28|G|4608

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain v

Elongation factor 2