HL_11HG_019

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_019 not in the Motif Atlas

Homologous match to HL_9H3G_093

Geometric discrepancy: 0.1689

The information below is about HL_9H3G_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

11HG|1|18|A|957
11HG|1|18|G|958
11HG|1|18|G|959
11HG|1|18|U|960
11HG|1|18|G|961
11HG|1|18|A|962
11HG|1|18|A|963
11HG|1|18|A|964
11HG|1|18|U|965
11HG|1|18|U|966

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain GG

Small ribosomal subunit protein uS11