HL_11HG_026
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 11HG|1|18|U|1300, 11HG|1|18|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11HG_026 not in the Motif Atlas
- Homologous match to HL_9H3G_100
- Geometric discrepancy: 0.3595
- The information below is about HL_9H3G_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
11HG|1|18|A|1295
11HG|1|18|U|1296
11HG|1|18|U|1297
11HG|1|18|G|1298
11HG|1|18|A|1299
11HG|1|18|U|1300
11HG|1|18|A|1301
11HG|1|18|G|1302
11HG|1|18|C|1303
11HG|1|18|U|1304
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain A
- Small ribosomal subunit protein uS19
- Chain XX
- 40S ribosomal protein S29
- Chain ZZ
- 40S ribosomal protein S27a
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