HL_11HG_033

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_033 not in the Motif Atlas

Homologous match to HL_9H3G_108

Geometric discrepancy: 0.0903

The information below is about HL_9H3G_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

11HG|1|18|G|1847
11HG|1|18|U|1848
11HG|1|18|G|1849
11HG|1|18|A|1850
11HG|1|18|A|1851
11HG|1|18|C|1852

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 41

eL41