HL_11HG_040

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

11HG|1|28|G|232, 11HG|1|28|U|233, 11HG|1|28|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_040 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.1886

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

11HG|1|28|G|230
11HG|1|28|U|231
11HG|1|28|G|232
11HG|1|28|U|233
11HG|1|28|G|234
11HG|1|28|A|235
11HG|1|28|G|236
11HG|1|28|G|237
11HG|1|28|C|238

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4