HL_11HG_056
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11HG_056 not in the Motif Atlas
- Homologous match to HL_8GLP_029
- Geometric discrepancy: 0.1795
- The information below is about HL_8GLP_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
11HG|1|28|G|1886
11HG|1|28|G|1887
11HG|1|28|A|1888
11HG|1|28|U|1889
11HG|1|28|G|1890
11HG|1|28|A|1891
11HG|1|28|A|1892
11HG|1|28|C|1893
Current chains
- Chain 28
- 28s rRNA
Nearby chains
- Chain 32
- Large ribosomal subunit protein eL32
- Chain 6
- 5S ribosomal RNA; 5S rRNA
- Chain L7
- 60S ribosomal protein L7
- Chain ee
- Large ribosomal subunit protein eL33
Coloring options: