HL_11HG_072

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

11HG|1|28|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_072 not in the Motif Atlas

Homologous match to HL_9PN5_041

Geometric discrepancy: 0.126

The information below is about HL_9PN5_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

11HG|1|28|U|2810
11HG|1|28|G|2811
11HG|1|28|A|2812
11HG|1|28|A|2813
11HG|1|28|C|2814
11HG|1|28|A|2815
11HG|1|28|G|2816

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 19

60S ribosomal protein L19