HL_11HG_082

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

11HG|1|28|A|4214, 11HG|1|28|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HG_082 not in the Motif Atlas

Homologous match to HL_8GLP_060

Geometric discrepancy: 0.0594

The information below is about HL_8GLP_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

11HG|1|28|U|4210
11HG|1|28|C|4211
11HG|1|28|A|4212
11HG|1|28|A|4213
11HG|1|28|A|4214
11HG|1|28|C|4215
11HG|1|28|G|4216
11HG|1|28|G|4217
11HG|1|28|U|4218
11HG|1|28|A|4219
11HG|1|28|A|4220
11HG|1|28|C|4221
11HG|1|28|G|4222

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29