HL_11KH_001
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11KH_001 not in the Motif Atlas
- Homologous match to HL_9H3G_079
- Geometric discrepancy: 0.0838
- The information below is about HL_9H3G_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.3
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11KH|1|18|G|7
11KH|1|18|U|8
11KH|1|18|U|9
11KH|1|18|G|10
11KH|1|18|A|11
11KH|1|18|U|12
11KH|1|18|C|13
11KH|1|18|C|14
11KH|1|18|U|15
11KH|1|18|G|16
11KH|1|18|C|17
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain LA
- La-related protein 1
- Chain RR
- 40S ribosomal protein S23
- Chain S2
- 40S ribosomal protein S2
Coloring options: