HL_11KH_003

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

11KH|1|18|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_003 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.2435

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

11KH|1|18|G|156
11KH|1|18|U|157
11KH|1|18|A|158
11KH|1|18|A|159
11KH|1|18|U|160
11KH|1|18|U|161
11KH|1|18|C|162

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S6

40S ribosomal protein S6

Chain SS

40S ribosomal protein S24