HL_11KH_007
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11KH_007 not in the Motif Atlas
- Homologous match to HL_9PN5_085
- Geometric discrepancy: 0.2551
- The information below is about HL_9PN5_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
11KH|1|18|U|416
11KH|1|18|C|417
11KH|1|18|A|418
11KH|1|18|G|419
11KH|1|18|G|420
11KH|1|18|G|421
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS17
- Chain RR
- 40S ribosomal protein S23
- Chain S2
- 40S ribosomal protein S2
- Chain S9
- 40S ribosomal protein S9
- Chain WX
- 40S ribosomal protein S15a
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