HL_11KH_013

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

11KH|1|18|G|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_013 not in the Motif Atlas

Homologous match to HL_9PN5_091

Geometric discrepancy: 0.1456

The information below is about HL_9PN5_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

11KH|1|18|C|618
11KH|1|18|A|619
11KH|1|18|G|620
11KH|1|18|C|621
11KH|1|18|C|622
11KH|1|18|G|623

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LA

La-related protein 1

Chain RR

40S ribosomal protein S23