HL_11KH_024
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 11KH|1|18|U|1300, 11KH|1|18|G|1302
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11KH_024 not in the Motif Atlas
- Homologous match to HL_9PN5_102
- Geometric discrepancy: 0.4595
- The information below is about HL_9PN5_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
11KH|1|18|A|1295
11KH|1|18|U|1296
11KH|1|18|U|1297
11KH|1|18|G|1298
11KH|1|18|A|1299
11KH|1|18|U|1300
11KH|1|18|A|1301
11KH|1|18|G|1302
11KH|1|18|C|1303
11KH|1|18|U|1304
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain HH
- 40S ribosomal protein S15
- Chain XX
- 40S ribosomal protein S29
- Chain ZZ
- 40S ribosomal protein S27a
Coloring options: