HL_11KH_025

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_025 not in the Motif Atlas

Homologous match to HL_9H3G_101

Geometric discrepancy: 0.1096

The information below is about HL_9H3G_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

11KH|1|18|A|1353
11KH|1|18|G|1354
11KH|1|18|C|1355
11KH|1|18|G|1356
11KH|1|18|A|1357
11KH|1|18|U|1358

Current chains

Chain 18

18S rRNA

Nearby chains

Chain BB

Small ribosomal subunit protein uS2

Chain S2

40S ribosomal protein S2