HL_11KH_028

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_028 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.1858

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

11KH|1|18|C|1460
11KH|1|18|G|1461
11KH|1|18|U|1462
11KH|1|18|U|1463
11KH|1|18|C|1464
11KH|1|18|A|1465
11KH|1|18|G|1466

Current chains

Chain 18

18S rRNA

Nearby chains

Chain AA

Receptor of activated protein C kinase 1

Chain BB

Small ribosomal subunit protein uS2

Chain RS

40S ribosomal protein S17