HL_11KH_036

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

11KH|1|28|G|134, 11KH|1|28|G|135, 11KH|1|28|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_036 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.2931

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.5

Basepair signature

cWW-F-F

Number of instances in this motif group

21

Unit IDs

11KH|1|28|C|131
11KH|1|28|G|132
11KH|1|28|C|133
11KH|1|28|G|134
11KH|1|28|G|135
11KH|1|28|C|136
11KH|1|28|G|137

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 35

60S ribosomal protein L35

Chain 37

60S ribosomal protein L37

Chain 58

5.8S ribosomal RNA; 5.8S rRNA