HL_11KH_054

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

11KH|1|28|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_054 not in the Motif Atlas

Homologous match to HL_8GLP_028

Geometric discrepancy: 0.0777

The information below is about HL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

11KH|1|28|G|1864
11KH|1|28|G|1865
11KH|1|28|U|1866
11KH|1|28|A|1867
11KH|1|28|A|1868
11KH|1|28|G|1869
11KH|1|28|C|1870

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10