HL_11KH_059
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11KH_059 not in the Motif Atlas
- Homologous match to HL_8GLP_033
- Geometric discrepancy: 0.1092
- The information below is about HL_8GLP_033
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 142
Unit IDs
11KH|1|28|A|2376
11KH|1|28|C|2377
11KH|1|28|G|2378
11KH|1|28|A|2379
11KH|1|28|G|2380
11KH|1|28|A|2381
11KH|1|28|A|2382
11KH|1|28|C|2383
11KH|1|28|U|2384
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 19
- 60S ribosomal protein L19
- Chain 31
- 60S ribosomal protein L31
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