HL_11KH_062

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

11KH|1|28|C|2488, 11KH|1|28|C|2489

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_062 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3813

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.2

Basepair signature

cWW-F

Number of instances in this motif group

3

Unit IDs

11KH|1|28|G|2487
11KH|1|28|C|2488
11KH|1|28|C|2489
11KH|1|28|U|2490
11KH|1|28|C|2491

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 58

5.8S ribosomal RNA; 5.8S rRNA