HL_11KH_063

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

11KH|1|28|U|2530, 11KH|1|28|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_063 not in the Motif Atlas

Homologous match to HL_9PN5_034

Geometric discrepancy: 0.1148

The information below is about HL_9PN5_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

11KH|1|28|G|2523
11KH|1|28|U|2524
11KH|1|28|U|2525
11KH|1|28|C|2526
11KH|1|28|A|2527
11KH|1|28|G|2528
11KH|1|28|A|2529
11KH|1|28|U|2530
11KH|1|28|C|2531
11KH|1|28|C|2532

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain 34

60S ribosomal protein L34

Chain F

Proliferation-associated protein 2G4

Chain cc

Large ribosomal subunit protein uL23