HL_11KH_078

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

11KH|1|28|A|3876, 11KH|1|28|A|3877, 11KH|1|28|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_078 not in the Motif Atlas

Homologous match to HL_8GLP_055

Geometric discrepancy: 0.0823

The information below is about HL_8GLP_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

11KH|1|28|G|3873
11KH|1|28|G|3874
11KH|1|28|G|3875
11KH|1|28|A|3876
11KH|1|28|A|3877
11KH|1|28|C|3878
11KH|1|28|G|3879
11KH|1|28|G|3880
11KH|1|28|G|3881
11KH|1|28|C|3882

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13