HL_11KH_094

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

11KH|1|28|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_094 not in the Motif Atlas

Homologous match to HL_8GLP_075

Geometric discrepancy: 0.0946

The information below is about HL_8GLP_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.4

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

11KH|1|28|G|4975
11KH|1|28|U|4976
11KH|1|28|A|4977
11KH|1|28|G|4978
11KH|1|28|A|4979
11KH|1|28|C|4980
11KH|1|28|G|4981
11KH|1|28|A|4982
11KH|1|28|C|4983

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3