HL_12CI_002

3D structure

PDB id

12CI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dopamine-binding aptamer, DGR-1A, in complex with dopamine

Experimental method

X-RAY DIFFRACTION

Resolution

2.59 Å

Loop

Sequence

CACCGUAAAUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12CI_002 not in the Motif Atlas

Geometric match to HL_6P2H_002

Geometric discrepancy: 0.3473

The information below is about HL_6P2H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98821.2

Basepair signature

cWW-F-F-F-F-cSW-cSH-F

Number of instances in this motif group

3

Unit IDs

12CI|1|A|C|53
12CI|1|A|A|54
12CI|1|A|C|55
12CI|1|A|C|56
12CI|1|A|G|57
12CI|1|A|U|58
12CI|1|A|A|59
12CI|1|A|A|60
12CI|1|A|A|61
12CI|1|A|U|62
12CI|1|A|G|63

Current chains

Chain A

DGR-1A aptamer

Nearby chains