HL_12CI_004
3D structure
- PDB id
- 12CI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dopamine-binding aptamer, DGR-1A, in complex with dopamine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.59 Å
Loop
- Sequence
- CACCGUAAAUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98821.2
- Basepair signature
- cWW-F-F-F-F-cSW-cSH-F
- Number of instances in this motif group
- 3
Unit IDs
12CI|1|B|C|53
12CI|1|B|A|54
12CI|1|B|C|55
12CI|1|B|C|56
12CI|1|B|G|57
12CI|1|B|U|58
12CI|1|B|A|59
12CI|1|B|A|60
12CI|1|B|A|61
12CI|1|B|U|62
12CI|1|B|G|63
Current chains
- Chain B
- DGR-1A aptamer
Nearby chains
- Chain A
- DGR-1A aptamer
Coloring options: