HL_12CJ_001

3D structure

PDB id

12CJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo structure of dopamine-binding aptamer, DGR-1B

Experimental method

X-RAY DIFFRACTION

Resolution

2.93 Å

Loop

Sequence

GGAUAUGGC

Length

9 nucleotides

Bulged bases

12CJ|1|A|U|29

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_12CJ_001 not in the Motif Atlas

Geometric match to HL_6P2H_001

Geometric discrepancy: 0.1002

The information below is about HL_6P2H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

12CJ|1|A|G|24
12CJ|1|A|G|25
12CJ|1|A|A|26
12CJ|1|A|U|27
12CJ|1|A|A|28
12CJ|1|A|U|29
12CJ|1|A|G|30
12CJ|1|A|G|31
12CJ|1|A|C|32

Current chains

Chain A

DGR-1B

Nearby chains

Chain B

DGR-1B